SMTL ID : 5lj1.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

1 x 6XX: 8-(((3R,4R,5S)-3-((4,4-difluorocyclohexyl)methoxy)-5-methoxypiperidin-4-yl)amino)-3-methyl-5-(5-methylpyridin-3-yl)-1,7-naphthyridin-2(1H)-one(Non-covalent)

6XX.2: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, C.95, Y.98, N.99, D.103, I.105 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:L.51, A:L.53 Hydrogen bonds: A:N.99, A:N.99, A:N.99, A:D.103 Water bridges: A:Q.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., A Chemical Probe for the ATAD2 Bromodomain. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-08-31

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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