SMTL ID : 5lj2.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: Q.82, I.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.82 EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.3: 3 residues within 4Å: Chain A: T.93, Y.96, I.97 No protein-ligand interaction detected (PLIP)

1 x 6XW: 5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one(Non-covalent)

6XW.4: 11 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, N.99, D.103, I.105 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.42, A:V.46, A:L.51, A:L.51, A:L.53, A:I.105, A:I.105 Hydrogen bonds: A:Q.44, A:N.99, A:N.99, A:N.99 Water bridges: A:P.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., A Chemical Probe for the ATAD2 Bromodomain. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-08-31

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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