SMTL ID : 5m3a.1

Crystal structure of BRD4 BROMODOMAIN 1 IN COMPLEX WITH LIGAND 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 EDO.2: 3 residues within 4Å: Chain A: Q.118, K.119, E.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.119, A:E.122

1 x 7E7: 3-methyl-6-(1-methyl-5-phenoxy-pyrazol-4-yl)-[1,2,4]triazolo[4,3-b]pyridazine(Non-covalent)

7E7.3: 8 residues within 4Å: Chain A: W.40, P.41, V.46, L.51, Y.98, N.99, I.105, M.108 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.40, A:V.46, A:L.51, A:I.105, A:I.105, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Y.56, A:Y.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geist, L. et al., Direct NMR Probing of Hydration Shells of Protein Ligand Interfaces and Its Application to Drug Design. J. Med. Chem. (2017)

Release Date

2017-09-27

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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