5m6y.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 5m6y.1

Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a methylisoquinoline Fasudil-derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7KB: 5-(1,4-diazepan-1-ylsulfonyl)-4-methyl-isoquinoline(Non-covalent)

7KB.1:

17 residues within 4Å:

Chain A: L.52, G.53, F.57, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, E.173, N.174, L.176, T.186, D.187, F.330
Chain B: R.14

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:L.52, A:F.57, A:V.60, A:A.73, A:L.176, A:T.186, A:F.330
Hydrogen bonds: A:V.126, A:D.187
Water bridges: A:T.54, A:N.174
Salt bridges: A:D.187

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2:

10 residues within 4Å:

Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, I.306, Y.309

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:V.18, A:F.21, A:F.21, A:Y.309, A:Y.309
Hydrogen bonds: A:Y.159

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wienen-Schmidt, B. et al., Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with differently methylated Fasudil-derived ligands. To be Published

Release Date

2018-06-06

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor alpha

Related Entries With Identical Sequence

1apm.1 | 1atp.1 | 1cdk.1 | 1cdk.2 | 1ctp.1 | 1fmo.1 | 1q24.1 | 1q61.1 | 1q62.1 | 1q8t.1 | 1q8u.1 | 1q8w.1 | 1rdq.1 | 1smh.1 | 1stc.1 | 1sve.1 | 1svg.1 | 1svh.1 | 1veb.1 | 1ydr.1 | 1yds.1 | 1ydt.1 | 2c1a.1 | 2c1b.1 | 2cpk.1 | 2erz.1 | 2f7e.1 | 2f7x.1 | 2f7z.1 | 2gfc.1 more...less...

2gnf.1 | 2gng.1 | 2gnh.1 | 2gni.1 | 2gnj.1 | 2gnl.1 | 2gu8.1 | 2jds.1 | 2jdt.1 | 2jdv.1 | 2oh0.1 | 2ojf.1 | 2qur.1 | 2uvx.1 | 2uvy.1 | 2uvz.1 | 2uw0.1 | 2uw3.1 | 2uw4.1 | 2uw5.1 | 2uw6.1 | 2uw7.1 | 2uw8.1 | 2uzt.1 | 2uzu.1 | 2uzv.1 | 2uzw.1 | 2vnw.1 | 2vny.1 | 2vo0.1 | 2vo3.1 | 2vo6.1 | 2vo7.1 | 3ama.1 | 3amb.1 | 3dnd.1 | 3dne.1 | 3e8c.1 | 3e8c.2 | 3e8c.3 | 3e8c.4 | 3e8c.5 | 3e8c.6 | 3e8e.1 | 3e8e.2 | 3e8e.3 | 3e8e.4 | 3e8e.5 | 3e8e.6 | 3fjq.1 | 3kkv.1 | 3l9l.1 | 3l9l.2 | 3l9m.1 | 3l9m.2 | 3l9n.1 | 3mvj.1 | 3mvj.2 | 3mvj.3 | 3nx8.1 | 3oog.1 | 3ovv.1 | 3ow3.1 | 3owp.1 | 3oxt.1 | 3p0m.1 | 3poo.1 | 3vqh.1 | 3zo2.1 | 3zo3.1 | 3zo4.1 | 4axa.1 | 4c36.1 | 4c37.1 | 4c38.1 | 4dg3.1 | 4dh1.1 | 4dh3.1 | 4dh5.1 | 4dh7.1 | 4dh8.1 | 4ie9.1 | 4ij9.1 | 4uj1.1 | 4uj2.1 | 4uj9.1 | 4uja.1 | 4ujb.1 | 4wb5.1 | 4wb6.1 | 4wb6.2 | 4wb7.1 | 4wb7.2 | 4wb8.1 | 4wih.1 | 4yxr.1 | 4yxs.1 | 4z83.1 | 4z84.1 | 5bx6.1 | 5bx7.1 | 5lcp.1 | 5lcq.1 | 5lcr.1 | 5lct.1 | 5lcu.1 | 5m0b.1 | 5m0c.1 | 5m0l.1 | 5m0u.1 | 5m6v.1 | 5m71.1 | 5m75.1 | 5mhi.1 | 5n1d.1 | 5n1e.1 | 5n1f.1 | 5n1g.1 | 5n1h.1 | 5n1k.1 | 5n1l.1 | 5n1m.1 | 5n1n.1 | 5n1o.1 | 5n23.1 | 5n32.1 | 5n33.1 | 5n36.1 | 5n37.1 | 5n39.1 | 5n3a.1 | 5n3b.1 | 5n3c.1 | 5n3d.1 | 5n3e.1 | 5n3f.1 | 5n3g.1 | 5n3h.1 | 5n3i.1 | 5n3j.1 | 5n3k.1 | 5n3l.1 | 5n3m.1 | 5n3o.1 | 5n3p.1 | 5n3q.1 | 5n3r.1 | 5n3s.1 | 5n3t.1 | 5n7p.1 | 5n7u.1 | 5ntj.1 | 5o0e.1 | 5o5m.1 | 5ok3.1 | 5ol3.1 | 5ot3.1 | 5otg.1 | 5oua.1 | 5ouc.1 | 5ous.1 | 6egw.1 | 6eh0.1 | 6eh2.1 | 6eh3.1 | 6em2.1 | 6em6.1 | 6em7.1 | 6ema.1 | 6ert.1 | 6eru.1 | 6erv.1 | 6erw.1 | 6esa.1 | 6f14.1 | 6frx.1 | 6i2a.1 | 6i2b.1 | 6i2c.1 | 6i2d.1 | 6i2h.1 | 6qj7.1 | 6snx.1 | 6sox.1 | 6spm.1 | 6sps.1 | 6spu.1 | 6spy.1 | 6sq1.1 | 6y05.1 | 6y0b.1 | 6y2o.1 | 6y2u.1 | 6y89.1 | 6y8c.1 | 6yna.1 | 6ynb.1 | 6ync.1 | 6ynr.1 | 6ynt.1 | 6yot.1 | 6you.1 | 6ypp.1 | 6yps.1 | 6yqi.1 | 6yqj.1 | 6yqk.1 | 6z08.1 | 6z44.1 | 6zn0.1 | 7axt.1 | 7axv.1 | 7axw.1 | 7baq.1 | 7bar.1 | 7bb0.1 | 7pid.1 | 7pie.1 | 7pif.1 | 7pig.1 | 7pih.1 | 7pns.1 | 8fe2.1 | 8fe2.2 | 8fe5.1 | 8fe5.2 | 8fec.1 | 8fec.2 | 8sf8.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top