SMTL ID : 5n3q.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 3-Aminobenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.21, A:F.103, A:L.155, A:E.158, A:Y.309, A:Y.309 Hydrogen bonds: A:E.158 Water bridges: A:K.295

2 x 3AB: 3-aminobenzamide(Non-covalent)

3AB.2: 12 residues within 4Å: Chain A: L.52, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, L.176, T.186, D.187, F.330 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.60, A:A.73, A:L.176, A:F.330 Hydrogen bonds: A:E.124, A:V.126, A:T.186 Water bridges: A:K.75, A:D.187 3AB.3: 11 residues within 4Å: Chain A: L.43, D.44, F.46, D.47, R.48, M.61, V.63, M.74, I.76, I.338, R.339 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.43, A:R.48, A:V.63 Hydrogen bonds: A:F.46, A:R.48, A:I.338, A:I.338

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: W.33, E.89, L.92, N.93, R.96, E.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96 Salt bridges: A:E.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

Related Entries With Identical Sequence