SMTL ID : 5n3m.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule D-arginine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.18, A:F.21, A:L.155, A:Y.309, A:Y.309 Water bridges: A:K.295

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: T.302, T.303, D.304, A.307, I.308, V.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.304 Water bridges: A:T.303 DMS.3: 5 residues within 4Å: Chain A: W.33, L.92, N.93, R.96, E.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96 Salt bridges: A:E.352 DMS.4: 5 residues within 4Å: Chain A: F.21, K.24, A.25, E.28, N.102 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.28 DMS.5: 1 residues within 4Å: Chain A: E.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.89

1 x DAR: D-ARGININE(Non-covalent)

DAR.6: 11 residues within 4Å: Chain A: F.132, R.136, K.171, P.172, E.173, T.204, E.206, Y.207, E.233, P.239, F.242 10 PLIP interactions: 10 interactions with chain A Water bridges: A:R.136, A:R.136, A:R.136, A:R.136, A:E.206, A:E.206 Salt bridges: A:R.136, A:E.173, A:E.206, A:E.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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