SMTL ID : 5n1g.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 4-(2-Amino-1,3-thiazol-4-yl)-1-oxaspiro[4.5]decan-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 11 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, Y.125, V.126, E.130, E.173, L.176, T.186, F.330 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.52, A:E.130, A:F.330, A:F.330 Water bridges: A:T.186

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 6 residues within 4Å: Chain A: W.33, E.89, L.92, N.93, R.96, E.352 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.92 Hydrogen bonds: A:R.96, A:E.352

1 x 8G5: (4R)-4-(2-amino-1,3-thiazol-4-yl)-1-oxaspiro[4.5]decan-2-one(Non-covalent)

8G5.3: 12 residues within 4Å: Chain A: S.17, V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.18, A:F.21, A:L.22, A:F.103, A:L.155, A:E.158, A:I.306, A:Y.309, A:Y.309 Hydrogen bonds: A:S.17, A:S.17 Salt bridges: A:K.295

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: F.21, K.24, A.25, N.102, Y.309 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.102 Salt bridges: A:E.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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