SMTL ID : 5n3l.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 4-[(1R)-2-amino-1-hydroxyethyl]benzene-1,2-diol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.103, A:E.158, A:Y.309 Hydrogen bonds: A:E.158 Water bridges: A:K.295 MPD.2: 6 residues within 4Å: Chain A: W.33, E.89, L.92, N.93, R.96, E.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96, A:E.352

1 x E5E: Noradrenaline(Non-covalent)

E5E.3: 16 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, E.130, E.173, N.174, L.176, T.186, D.187, F.330 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.60, A:L.176, A:T.186, A:F.330, A:F.330 Hydrogen bonds: A:V.126, A:E.173, A:T.186

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: S.266, D.267, D.270, H.297, K.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.267 Salt bridges: A:D.267, A:D.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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