SMTL ID : 6em6.1

Crystal structure of the Protein-Kinase A catalytic subunit from Criteculus Griseus in complex with compounds RKp032 and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 22 residues within 4Å: Chain A: L.52, G.53, T.54, G.55, S.56, V.60, A.73, K.75, V.107, M.123, E.124, Y.125, V.126, E.130, E.173, N.174, L.176, T.186, D.187, F.330 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.56, A:S.56, A:S.56, A:E.124, A:V.126, A:T.186 Water bridges: A:S.56, A:S.56, A:S.56, A:K.75, A:K.75, A:K.75, A:E.124 Salt bridges: A:K.75, A:K.75

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.56 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.56, H2O.2, H2O.5, H2O.5, H2O.7 MG.3: 2 residues within 4Å: Chain A: D.187 Ligands: ADP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.187, H2O.1, H2O.3, H2O.5

1 x RIP: beta-D-ribopyranose(Post Translational Modification)

RIP.4: 2 residues within 4Å: Chain B: S.14, R.15 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, J.M. et al., Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage. Acs Omega (2019)

Release Date

2018-10-10

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
UPF0418 protein FAM164A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

cAMP-dependent protein kinase catalytic subunit alpha

UPF0418 protein FAM164A

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