SMTL ID : 6ynr.1

Crystal structure of the cAMP-dependent protein kinase A in complex with 1,7-Naphthyridin-8-amine (soaked) and PKI (5-24)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: S.133, H.134, R.137, N.329, F.330, D.331 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.331 Water bridges: A:N.329

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: N.39, T.40, A.41, Q.42, H.45 No protein-ligand interaction detected (PLIP)

1 x O72: 1,7-naphthyridin-8-amine(Non-covalent)

O72.3: 11 residues within 4Å: Chain A: L.52, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, L.176, T.186, F.330 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.52, A:V.60, A:L.176, A:L.176, A:F.330 Hydrogen bonds: A:E.124, A:V.126, A:T.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wienen-Schmidt, B. et al., Two Methods, One Goal: Structural Differences between Cocrystallization and Crystal Soaking to Discover Ligand Binding Poses. Chemmedchem (2021)

Release Date

2020-10-14

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor alpha

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