SMTL ID : 6spu.1

Crystal structure of cAMP-dependent protein kinase A (CHO PKA) in complex with 3-aminobenzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: F.21, K.24, A.25, N.102, Y.309 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.102, A:Y.309 Salt bridges: A:E.28 DMS.2: 5 residues within 4Å: Chain A: W.33, L.92, N.93, R.96, E.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96 Salt bridges: A:E.352 DMS.3: 5 residues within 4Å: Chain A: G.139, R.140, A.236, G.237, Y.238 No protein-ligand interaction detected (PLIP) DMS.4: 4 residues within 4Å: Chain A: L.201, C.202, G.203, L.208 No protein-ligand interaction detected (PLIP)

1 x GAB: 3-AMINOBENZOIC ACID(Non-covalent)

GAB.5: 11 residues within 4Å: Chain A: L.52, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, L.176, T.186, F.330 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.60, A:A.73, A:L.176, A:F.330 Hydrogen bonds: A:V.126, A:T.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2020-09-30

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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