SMTL ID : 5n1e.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule N-(1,3-benzodioxol-5-yl)-2-piperidin-1-ylacetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.103, A:L.155, A:I.306, A:Y.309, A:Y.309 Hydrogen bonds: A:E.158, A:K.295

1 x 9NT: ~{N}-(1,3-benzodioxol-5-yl)-2-piperidin-1-ium-1-yl-ethanamide(Non-covalent)

9NT.2: 16 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, E.130, E.173, N.174, L.176, T.186, D.187, F.330 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.52, A:V.60, A:L.176, A:F.330, A:F.330 Hydrogen bonds: A:V.126, A:T.186 Water bridges: A:D.187

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: Y.232, Y.238, R.259, F.260, P.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.238 DMS.4: 3 residues within 4Å: Chain A: L.85, K.86, E.89 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.89 Salt bridges: A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-14

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor

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