SMTL ID : 6sq1.1

Crystal structure of cAMP-dependent Protein Kinase A (CHO PKA) in complex with Aminofasudil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: H.134, R.137, I.138, F.317, I.318, P.319, K.320 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.134, A:F.317, A:F.317 Hydrogen bonds: A:H.134, A:R.137 MPD.2: 10 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, I.306, Y.309 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.21, A:F.103, A:L.155, A:E.158, A:Y.309, A:Y.309 Water bridges: A:K.295

1 x LRT: 5-(1,4-diazepan-1-ylsulfonyl)isoquinolin-1-amine(Non-covalent)

LRT.3: 15 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, E.130, E.173, N.174, L.176, T.186, F.330 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.60, A:A.73, A:L.176, A:T.186, A:F.330 Hydrogen bonds: A:E.124, A:V.126, A:E.130 Salt bridges: A:E.130

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: L.201, C.202, G.203, P.205, L.208 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.203 DMS.5: 5 residues within 4Å: Chain A: G.139, R.140, A.236, G.237, Y.238 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., A crystallographic study of cAMP-dependent Protein Kinase A in complex with different Fasudil-derivatives. To Be Published

Release Date

2020-09-30

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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