SMTL ID : 6spy.1

Crystal structure of cAMP-dependent protein kinase A (CHO PKA) in complex with 6-(morpholin-4-yl)pyridine-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x LR8: 6-morpholin-4-ylpyridine-3-carboxamide(Non-covalent)

LR8.1: 13 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, E.130, L.176, T.186, F.330 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.52, A:A.73, A:L.176, A:F.330 Hydrogen bonds: A:E.124, A:V.126 Water bridges: A:T.54

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: N.39, T.40, A.41, Q.42, H.45 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 10 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, I.306, Y.309 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.103, A:E.158, A:Y.309 Water bridges: A:K.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2020-09-30

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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