7axv.1 | SWISS-MODEL Template Library

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SMTL ID : 7axv.1

Crystal structure of the cAMP-dependent protein kinase A cocrystallized with 5-isoquinolinesulfonic acid and PKI (5-24)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-1-1-mer

Ligands

2 x S95: isoquinoline-5-sulfonic acid(Non-covalent)

S95.1:	4 residues within 4Å: Chain A: K.86, Q.87, I.88, E.89 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.86, A:K.86 Hydrogen bonds: A:I.88, A:E.89 Water bridges: A:K.86, A:H.90
S95.2:	11 residues within 4Å: Chain A: L.52, G.53, V.60, A.73, M.123, E.124, Y.125, V.126, E.130, L.176, F.330 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.60, A:A.73, A:L.176, A:F.330 Hydrogen bonds: A:V.126

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

4 residues within 4Å:

Chain A: V.18, F.21, F.103, Y.309

2 PLIP interactions:

2 interactions with chain A

pi-Cation interactions: A:F.21, A:Y.309

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Oebbeke, M. et al., Fragment based drug design - Small chemical changes of fragments effecting big changes in binding. To Be Published

Release Date

2021-11-24

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor alpha

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