SMTL ID : 5n37.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule N-(1,3-benzodioxol-5-ylmethyl)cyclopentanamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 12 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 Ligands: 8JT.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.21, A:F.103, A:L.155, A:E.158, A:I.306, A:Y.309, A:Y.309 Hydrogen bonds: A:E.158 Water bridges: A:K.295

2 x 8JT: 1,3-benzodioxol-5-ylmethyl(cyclopentyl)azanium(Non-covalent)(Non-functional Binders)

8JT.2: 17 residues within 4Å: Chain A: L.52, G.53, T.54, G.55, F.57, G.58, R.59, V.60, K.75, I.76, L.77, E.130, E.173, L.176, T.186, D.187, F.330 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.60, A:L.176, A:T.186 Hydrogen bonds: A:D.187 Water bridges: A:K.75, A:D.187 8JT.3: 6 residues within 4Å: Chain A: S.17, F.21, I.306, Y.309, Q.310 Ligands: MPD.1 No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: W.33, E.89, L.92, N.93, R.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.96 DMS.5: 6 residues within 4Å: Chain A: Y.232, Y.238, R.259, F.260, P.261, S.262 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.238 DMS.6: 3 residues within 4Å: Chain A: L.85, K.86, E.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor

Related Entries With Identical Sequence