SMTL ID : 5n3g.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule (R)-1,4-oxazepan-6-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

2 x 8KB: (6~{R})-1,4-oxazepan-6-ol(Non-covalent)

8KB.1: 10 residues within 4Å: Chain A: F.57, K.75, Q.87, E.94, D.169, K.171, N.174, D.187, G.189, F.190 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.75, A:D.169, A:G.189 Water bridges: A:E.94, A:E.94, A:D.187, A:G.189 8KB.2: 5 residues within 4Å: Chain A: K.86, E.89, H.90, K.192, T.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.89 Water bridges: A:H.90

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 6 residues within 4Å: Chain A: W.33, E.89, L.92, N.93, R.96, E.352 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.92 Hydrogen bonds: A:R.96, A:E.352 MPD.4: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.21, A:F.103, A:L.155, A:E.158, A:Y.309, A:Y.309 Hydrogen bonds: A:E.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To Be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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