SMTL ID : 5n3h.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule pyridine-3-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.1: 11 residues within 4Å: Chain A: L.52, V.60, A.73, V.107, M.123, E.124, Y.125, V.126, L.176, T.186, F.330 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.73, A:L.176, A:F.330 Hydrogen bonds: A:E.124, A:V.126, A:T.186 Water bridges: A:D.187

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: F.21, K.24, A.25, E.28, N.102 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.28 DMS.3: 6 residues within 4Å: Chain A: T.302, T.303, D.304, A.307, I.308, V.313 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.304 DMS.4: 5 residues within 4Å: Chain A: Y.232, Y.238, R.259, F.260, P.261 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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