SMTL ID : 5n33.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 3-amino-5-(trifluoromethyl)-1H-pyridin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 8JW: 3-azanyl-5-(trifluoromethyl)-1~{H}-pyridin-2-one(Non-covalent)

8JW.1: 13 residues within 4Å: Chain A: L.52, V.60, A.73, K.75, V.107, M.123, E.124, Y.125, V.126, L.176, T.186, D.187, F.330 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.60, A:A.73, A:L.176, A:T.186 Hydrogen bonds: A:E.124, A:V.126

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.21, A:F.21, A:F.103, A:L.155, A:Y.309, A:Y.309 Hydrogen bonds: A:E.158, A:K.295

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: R.197, L.280, T.281 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oebbeke, M. et al., Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
cAMP-dependent protein kinase inhibitor alpha-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

cAMP-dependent protein kinase catalytic subunit alpha

cAMP-dependent protein kinase inhibitor alpha-like protein

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