SMTL ID : 6em7.1

Crystal Structure of the Protein-Kinase A catalytic subunit from Criteculus Griseus in complex with compounds RKp120 and ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.18, F.21, L.22, F.103, L.155, E.158, Y.159, K.295, W.305, I.306, Y.309 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.21, A:F.103, A:L.155, A:E.158, A:I.306, A:Y.309 Hydrogen bonds: A:E.158 Water bridges: A:K.295 MPD.2: 7 residues within 4Å: Chain A: S.133, H.134, R.137, S.328, N.329, F.330, D.331 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.137 Water bridges: A:S.133

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 21 residues within 4Å: Chain A: L.52, G.53, T.54, G.55, F.57, V.60, A.73, K.75, V.107, M.123, E.124, Y.125, V.126, E.130, E.173, N.174, L.176, T.186, D.187, F.330 Chain B: R.14 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.124, A:V.126, A:E.130, A:E.130, A:E.173, A:T.186, A:D.187, B:R.14 Salt bridges: A:K.75, A:K.75

1 x RIP: beta-D-ribopyranose(Post Translational Modification)

RIP.4: 5 residues within 4Å: Chain A: T.54, G.55, S.56 Chain B: R.14, S.16 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.14, A:T.54, A:T.54 Water bridges: B:A.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, J.M. et al., Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage. Acs Omega (2019)

Release Date

2018-10-10

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A
UPF0418 protein FAM164A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

cAMP-dependent protein kinase catalytic subunit alpha

UPF0418 protein FAM164A

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