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SMTL ID : 5mkz.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 4-chloro-2-methyl-5-(((3-methylthiophen-2-yl)methyl)amino)pyridazin-3(2H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x RNK: 4-chloranyl-2-methyl-5-[(3-methylthiophen-2-yl)methylamino]pyridazin-3-one(Non-covalent)

RNK.1:

9 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.98, N.99, I.105

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:W.40, A:W.40, A:P.41
Hydrogen bonds: A:N.99
Halogen bonds: A:N.99

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	6 residues within 4Å: Chain A: T.32, K.35, L.115, Q.118, K.119 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.32, A:T.32, A:K.35, A:Q.118, A:K.119
GOL.3:	6 residues within 4Å: Chain A: R.27, V.28, K.31, T.32, K.35 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.27, A:R.27, A:K.35, A:K.35
GOL.4:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.61, A:T.62, A:T.62, A:T.62

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Humphreys, P.G. et al., Discovery of a Potent, Cell Penetrant, and Selective p300/CBP-Associated Factor (PCAF)/General Control Nonderepressible 5 (GCN5) Bromodomain Chemical Probe. J. Med. Chem. (2017)

Release Date

2017-12-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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