SMTL ID : 6dmj.1

A multiconformer ligand model of inhibitor 53W bound to CREB binding protein bromodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x 53W: 5-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[2-(4-methoxyphenyl)ethyl]-1-[2-(morpholin-4-yl)ethyl]-1H-benzimidazole(Non-covalent)

53W.1: 14 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, D.47, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Q.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Zundert, G.C.P. et al., qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps. J. Med. Chem. (2018)

Release Date

2018-12-19

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence