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SMTL ID : 6fnx.1

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR F1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

1 x DYZ: 7-ethyl-3-(phenylmethyl)purine-2,6-dione(Non-covalent)

DYZ.1:

10 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, N.99, I.105, M.108

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:I.105, A:I.105, A:I.105
Hydrogen bonds: A:N.99, A:N.99

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	1 residues within 4Å: Chain A: Q.37 No protein-ligand interaction detected (PLIP)
EDO.3:	2 residues within 4Å: Chain A: K.71 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.71 Water bridges: A:K.71, A:N.75, A:N.75
EDO.4:	3 residues within 4Å: Chain A: S.1, M.2, V.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.1
EDO.5:	2 residues within 4Å: Chain A: K.71 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.71 Water bridges: A:N.75, A:N.75, A:N.75

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hoffer, L. et al., Integrated Strategy for Lead Optimization Based on Fragment Growing: The Diversity-Oriented-Target-Focused-Synthesis Approach. J. Med. Chem. (2018)

Release Date

2018-06-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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