SMTL ID : 6fo5.1

FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR #17

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.95 Å

Oligo State

monomer

Ligands

1 x DZH: ~{N}-[[4-[[7-ethyl-2,6-bis(oxidanylidene)purin-3-yl]methyl]phenyl]methyl]-2-oxidanylidene-1,3,4,5-tetrahydro-1-benzazepine-7-sulfonamide(Non-covalent)

DZH.1: 11 residues within 4Å: Chain A: F.38, W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.38, A:W.40, A:F.42, A:D.104, A:I.105 Hydrogen bonds: A:N.99, A:N.99, A:D.104

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.5, P.6, E.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffer, L. et al., Integrated Strategy for Lead Optimization Based on Fragment Growing: The Diversity-Oriented-Target-Focused-Synthesis Approach. J. Med. Chem. (2018)

Release Date

2018-06-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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