SMTL ID : 6ft3.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a 3,5-dimethylisoxazol ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 Water bridges: A:T.62

1 x E5T: 3-[(~{R})-cyclopropyl(oxidanyl)methyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)phenol(Non-covalent)

E5T.2: 10 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, N.99, I.105, M.108 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:I.105, A:I.105 Hydrogen bonds: A:P.41, A:Q.44, A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jennings, L.E. et al., BET bromodomain ligands: Probing the WPF shelf to improve BRD4 bromodomain affinity and metabolic stability. Bioorg.Med.Chem. (2018)

Release Date

2018-04-18

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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