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SMTL ID : 6g0g.1

BRD4 (BD1) in complex with APSC-derived ligands (e.g. sulfasalazine)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:

5 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62
Water bridges: A:T.62, A:T.62

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2:

1 residues within 4Å:

Chain A: N.121

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.121

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

8 residues within 4Å:

Chain A: P.41, V.46, L.53, Y.56, C.95, N.99, I.105
Ligands: SAS.4

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.99

1 x SAS: 2-HYDROXY-(5-([4-(2-PYRIDINYLAMINO)SULFONYL]PHENYL)AZO)BENZOIC ACID(Non-covalent)

SAS.4:

8 residues within 4Å:

Chain A: F.38, W.40, P.41, L.51, D.104, I.105, M.108
Ligands: DMS.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:F.38, A:W.40, A:W.40, A:P.41, A:P.41, A:D.104, A:I.105
Water bridges: A:Q.44

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Humbeck, L. et al., Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma. Chemrxiv (2019)

Release Date

2020-01-08

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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