6g0h.1 | SWISS-MODEL Template Library

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SMTL ID : 6g0h.1

BRD4 (BD1) in complex with APSC-derived ligands (e.g. SSLH01 a sulfasalazine derivate)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:

6 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94, I.97

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.61, A:T.62, A:T.62, A:N.94

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

11 residues within 4Å:

Chain A: P.41, F.42, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105
Ligands: EGE.3

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.99

1 x EGE: 4-azanyl-2-oxidanyl-5-[(~{E})-[4-(pyridin-2-ylsulfamoyl)phenyl]diazenyl]benzoic acid(Non-covalent)

EGE.3:

8 residues within 4Å:

Chain A: F.38, W.40, P.41, L.51, D.104, I.105, M.108
Ligands: DMS.2

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:P.41, A:D.104
Water bridges: A:Q.44

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Humbeck, L. et al., Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma. Chemrxiv (2019)

Release Date

2020-01-08

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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