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SMTL ID : 6hov.1

Crystal Structure of BRD4 first bromodomain in complex with ferulic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.61, A:T.62, A:N.94 Water bridges: A:I.59
EDO.2:	2 residues within 4Å: Chain A: Q.118, K.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.119 Water bridges: A:K.119, A:E.122

1 x FER: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID(Non-covalent)

FER.3:

9 residues within 4Å:

Chain A: W.40, P.41, Q.44, V.46, L.51, Y.56, C.95, N.99, I.105

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:P.41, A:V.46, A:L.51, A:I.105, A:I.105
Hydrogen bonds: A:Q.44, A:N.99
Water bridges: A:N.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cozza, G. et al., Biochemical and cellular mechanism of protein kinase CK2 inhibition by deceptive curcumin. Febs J. (2020)

Release Date

2019-10-09

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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