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SMTL ID : 6i7y.1

Crystal Structure of the first bromodomain of BRD4 in complex with RT56

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62
EDO.2:	3 residues within 4Å: Chain A: Y.57, K.58, K.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.61 Water bridges: A:Y.57

1 x H7E: [1-[4-[2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]ethanoylamino]phenyl]piperidin-4-yl]-trimethyl-azanium(Non-covalent)

H7E.3:

9 residues within 4Å:

Chain A: W.40, P.41, F.42, L.51, L.53, N.99, D.104, I.105, M.108

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:P.41, A:F.42, A:L.51, A:L.51, A:L.53, A:L.53, A:I.105
Hydrogen bonds: A:N.99, A:N.99

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Picaud, S. et al., Crystal Structure of the first bromodomain of BRD4 in complex with RT56. To Be Published

Release Date

2019-11-27

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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