SMTL ID : 6s25.1

Crystal Structure of the first bromodomain of BRD4 in complex with a benzodiazepine ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 EDO.2: 6 residues within 4Å: Chain A: R.17, Q.18, L.22, Q.23, L.73, N.76 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.76, A:N.76 EDO.3: 1 residues within 4Å: Ligands: KSZ.4 No protein-ligand interaction detected (PLIP)

1 x KSZ: ~{tert}-butyl ~{N}-[3-[2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]ethanoylamino]propyl]carbamate(Non-covalent)

KSZ.4: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108 Ligands: EDO.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:P.41, A:F.42, A:V.46, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:N.99, A:N.99 Water bridges: A:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picaud, S. et al., Crystal Structure of the first bromodomain of BRD4 in complex with a benzodiazepine ligand. To Be Published

Release Date

2019-07-31

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence