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SMTL ID : 6s6k.1

Crystal Structure of BRD4(1) bound to inhibitor BUX2 (9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x KXK: ~{N}-[5-(azepan-1-ylsulfonyl)-2-methoxy-phenyl]-3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrole-1-carboxamide(Non-covalent)

KXK.1:

11 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, Y.98, N.99
Ligands: BU3.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:F.42, A:L.51, A:L.53, A:Y.98
Hydrogen bonds: A:P.41, A:Q.44, A:N.99
pi-Stacking: A:W.40

4 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2:	2 residues within 4Å: Chain A: E.74, N.75 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.74 Hydrogen bonds: A:N.75, A:N.75
BU3.3:	4 residues within 4Å: Chain A: W.40, I.105, M.108 Ligands: KXK.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.40, A:I.105 Water bridges: A:I.105
BU3.4:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.97 Hydrogen bonds: A:I.59, A:K.61, A:T.62
BU3.5:	4 residues within 4Å: Chain A: N.3, P.6, P.45, D.47 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.45 Hydrogen bonds: A:P.45

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrroles as Dual BET-BRD7/9 Bromodomain Inhibitors Address BETi Insensitive Human Cancer Cell Lines. J.Med.Chem. (2020)

Release Date

2020-12-09

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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2oss.1 | 2yel.1 | 3mxf.1 | 3p5o.1 | 3svf.1 | 3svg.1 | 3u5j.1 | 3u5k.1 | 3u5k.2 | 3u5k.3 | 3u5k.4 | 3u5l.1 | 3uvw.1 | 3uvx.1 | 3uvy.1 | 3uw9.1 | 3uw9.2 | 3zyu.1 | 3zyu.2 | 4a9l.1 | 4bw1.1 | 4bw2.1 | 4bw3.1 | 4bw4.1 | 4c67.1 | 4cfk.1 | 4cfl.1 | 4cl9.1 | 4clb.1 | 4e96.1 more...less...

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