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SMTL ID : 6saj.1

Crystal Structure of BRD4(1) bound to inhibitor BUX6 (12)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.1:	5 residues within 4Å: Chain A: W.40, D.104, M.108 Ligands: BU3.3, L2Z.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.104
BU3.2:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.62, A:I.97 Hydrogen bonds: A:I.59, A:K.61, A:T.62
BU3.3:	5 residues within 4Å: Chain A: F.38, W.40, D.104, M.108 Ligands: BU3.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.38, A:W.40 Hydrogen bonds: A:D.104

1 x L2Z: ~{N}-[2-methoxy-5-(2-oxa-6-azaspiro[3.3]heptan-6-ylsulfonyl)phenyl]-3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrole-1-carboxamide(Non-covalent)

L2Z.4:

13 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, D.47, K.50, L.51, L.53, Y.56, Y.98, N.99
Ligands: BU3.1

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:F.42, A:L.51, A:L.53, A:Y.56, A:Y.98, A:Y.98
Hydrogen bonds: A:P.41, A:Q.44, A:N.99
pi-Stacking: A:W.40

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrroles as Dual BET-BRD7/9 Bromodomain Inhibitors Address BETi Insensitive Human Cancer Cell Lines. J.Med.Chem. (2020)

Release Date

2020-12-16

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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2oss.1 | 2yel.1 | 3mxf.1 | 3p5o.1 | 3svf.1 | 3svg.1 | 3u5j.1 | 3u5k.1 | 3u5k.2 | 3u5k.3 | 3u5k.4 | 3u5l.1 | 3uvw.1 | 3uvx.1 | 3uvy.1 | 3uw9.1 | 3uw9.2 | 3zyu.1 | 3zyu.2 | 4a9l.1 | 4bw1.1 | 4bw2.1 | 4bw3.1 | 4bw4.1 | 4c67.1 | 4cfk.1 | 4cfl.1 | 4cl9.1 | 4clb.1 | 4e96.1 more...less...

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