SMTL ID : 6se4.1

Crystal Structure of the first bromodomain of human BRD4 in complex with (+)-JD1, an Organometallic BET Bromodomain Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: K.50 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: Y.98, N.99 Ligands: L8W.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.99 Water bridges: A:D.103, A:D.103

1 x L8W: (+)-JD1(Non-covalent)

L8W.2: 12 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.98, N.99, D.104, I.105, M.108 Ligands: EDO.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.98, A:D.104, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: G.102, D.103, D.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:D.104, A:I.105 Salt bridges: A:D.103, A:D.104 DMS.5: 1 residues within 4Å: Chain A: Q.44 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krojer, T. et al., Crystal Structure of the first bromodomain of human BRD4 in complex with (+)-JD1, an Organometallic BET Bromodomain Inhibitor. To Be Published

Release Date

2019-08-14

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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