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SMTL ID : 6swq.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH iBET-BD2 (GSK046)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94
EDO.2:	4 residues within 4Å: Chain A: D.103, D.104, I.105 Ligands: LW5.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104, A:I.105
EDO.3:	1 residues within 4Å: Chain A: T.62 No protein-ligand interaction detected (PLIP)

1 x LW5: 4-acetamido-3-fluoranyl-~{N}-(4-oxidanylcyclohexyl)-5-[(1~{S})-1-phenylethoxy]benzamide(Non-covalent)

LW5.4:

15 residues within 4Å:

Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, K.100, D.103, I.105, M.108
Ligands: EDO.2

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:W.40, A:W.40, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.98, A:I.105
Hydrogen bonds: A:N.99, A:N.99, A:K.100
Water bridges: A:K.100

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Gilan, O. et al., Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation. Science (2020)

Release Date

2020-04-01

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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