SMTL ID : 6tpz.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-(1-(1,3-dimethoxypropan-2-yl)-5-morpholino-1H-benzo[d]imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.2: 4 residues within 4Å: Chain A: E.110, E.113, K.114, L.117 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.114

1 x NV2: 5-[1-(1,3-dimethoxypropan-2-yl)-5-morpholin-4-yl-benzimidazol-2-yl]-1,3-dimethyl-pyridin-2-one(Non-covalent)

NV2.3: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, Y.98, N.99, I.105, M.108 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:L.51, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Y.56 pi-Stacking: A:W.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wellaway, C.R. et al., Discovery of a Bromodomain and Extraterminal Inhibitor with a Low Predicted Human Dose through Synergistic Use of Encoded Library Technology and Fragment Screening. J.Med.Chem. (2020)

Release Date

2020-01-15

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 4

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