SMTL ID : 6u0d.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0590

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: P.41, F.42, V.46, L.53, C.95, N.99, I.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99

1 x POJ: N-[4-({(2S)-2-[(morpholin-4-yl)methyl]pyrrolidin-1-yl}sulfonyl)phenyl]-N'-[4-(trifluoromethyl)phenyl]urea(Non-covalent)

POJ.2: 8 residues within 4Å: Chain A: T.93, Y.96, I.97, P.101, G.102, V.106, L.107, E.110 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.96, A:Y.96, A:Y.96, A:P.101, A:V.106, A:E.110 Hydrogen bonds: A:G.102 Water bridges: A:Y.96 Salt bridges: A:E.110, A:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Discovery, X-ray Crystallography, and Anti-inflammatory Activity of Bromodomain-containing Protein 4 (BRD4) BD1 Inhibitors Targeting a Distinct New Binding Site. J. Med. Chem. (2022)

Release Date

2020-08-19

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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