SMTL ID : 6v1u.1

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to TP-472

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x QMG: 3-(6-acetylpyrrolo[1,2-a]pyrimidin-8-yl)-N-cyclopropyl-4-methylbenzamide(Non-covalent)

QMG.1: 11 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, K.50, L.51, L.53, N.99 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:Q.44, A:D.47, A:K.50, A:L.51, A:L.51, A:L.53 Hydrogen bonds: A:D.47, A:N.99 Water bridges: A:Q.44, A:Q.44, A:Y.56

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, R.M. et al., Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains. J.Med.Chem. (2020)

Release Date

2020-03-11

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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