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SMTL ID : 6xvc.1

CRYSTAL STRUCTURE OF BRD4-BD1 WITH COMPOUND 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	8 residues within 4Å: Chain A: R.17, T.19, Q.21, L.22, W.79, N.80, A.81, Q.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:A.81 Water bridges: A:N.20
EDO.2:	6 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94, I.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

1 x O32: (4~{R})-4-[(1~{R})-1-[7-(3-methyl-[1,2,4]triazolo[4,3-a]pyridin-6-yl)quinolin-5-yl]oxyethyl]pyrrolidin-2-one(Non-covalent)

O32.3:

14 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:P.41, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:I.105
Hydrogen bonds: A:N.99
Water bridges: A:Q.44
pi-Stacking: A:W.40

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Platzer, G. et al., PI by NMR: Probing CH-pi Interactions in Protein-Ligand Complexes by NMR Spectroscopy. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-07-08

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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