SMTL ID : 6yqn.1

Crystal structure of the first bromodomain of human BRD4 in complex with the dual inhibitor TW9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 Water bridges: A:T.62 EDO.2: 6 residues within 4Å: Chain A: R.17, Q.18, L.22, Q.23, L.73, N.76 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.76

1 x P8T: ~{N}-(2-aminophenyl)-4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]t rideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]benzamide(Non-covalent)

P8T.3: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:N.99, A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Characterization of a dual BET/HDAC inhibitor for treatment of pancreatic ductal adenocarcinoma. Int.J.Cancer (2020)

Release Date

2020-05-06

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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