SMTL ID : 6zb3.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH GSK620

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.104 EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 5 residues within 4Å: Chain A: T.93, Y.96, I.97, V.106, E.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.110 Water bridges: A:E.113

1 x QCZ: ~{N}5-cyclopropyl-~{N}3-methyl-2-oxidanylidene-1-(phenylmethyl)pyridine-3,5-dicarboxamide(Non-covalent)

QCZ.4: 12 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.98, N.99, K.100, D.103, I.105, M.108 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:L.53, A:Y.98, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99 Water bridges: A:P.41, A:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seal, J.T. et al., The Optimization of a Novel, Weak Bromo and Extra Terminal Domain (BET) Bromodomain Fragment Ligand to a Potent and Selective Second Bromodomain (BD2) Inhibitor. J.Med.Chem. (2020)

Release Date

2020-08-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 4

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