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SMTL ID : 6zed.1

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound F1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

monomer

Ligands

1 x QGN: 4,5-dimethyl-1~{H}-pyrazolo[3,4-c]pyridazin-3-amine(Non-covalent)

QGN.1:

9 residues within 4Å:

Chain A: P.41, F.42, V.46, L.51, L.53, Y.98, N.99, I.105
Ligands: EDO.2

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:L.51, A:I.105
Hydrogen bonds: A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: QGN.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105
EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Martinez-Cartro, M. et al., CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound F1. To Be Published

Release Date

2020-07-29

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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