SMTL ID : 6zel.1

CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound F5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62 EDO.2: 2 residues within 4Å: Chain A: N.89, T.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93 Water bridges: A:T.93, A:T.93, A:E.113 EDO.3: 3 residues within 4Å: Chain A: V.106, L.107, E.110 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.102, A:E.110

1 x QGQ: 3,5-dimethyl-4-[(6-methylpyrimidin-4-yl)sulfanylmethyl]-1,2-oxazole(Non-covalent)

QGQ.4: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.98, N.99, I.105, M.108 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:L.53, A:Y.98, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:I.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Cartro, M. et al., CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX with compound F5. To Be Published

Release Date

2020-07-29

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 4

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