SMTL ID : 6zuv.1

Notum fragment 286

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.19, V.22, L.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.295, K.326, V.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:Y.123 Salt bridges: A:R.56 SO4.5: 6 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 Salt bridges: A:R.42 SO4.6: 5 residues within 4Å: Chain A: R.167, E.170, V.225, E.227, R.230 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:E.227 Salt bridges: A:R.167, A:R.230 SO4.7: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 2 residues within 4Å: Chain A: R.13, E.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13, A:E.36, A:E.36 EDO.9: 7 residues within 4Å: Chain A: L.192, D.193, N.194, A.209, P.210, T.211, V.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:T.211 EDO.10: 3 residues within 4Å: Chain A: R.317, S.318, H.319 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.318, A:H.319, A:H.319

1 x B1J: [1-(4-chlorophenyl)-1,2,3-triazol-4-yl]methanol(Non-covalent)

B1J.11: 10 residues within 4Å: Chain A: W.51, Y.52, S.155, A.156, T.159, F.191, F.242, F.243, A.265, H.312 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.51, A:S.155, A:A.156, A:H.312 pi-Stacking: A:W.51, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahy, W. et al., 5-Phenyl-1,3,4-oxadiazol-2(3 H )-ones Are Potent Inhibitors of Notum Carboxylesterase Activity Identified by the Optimization of a Crystallographic Fragment Screening Hit. J.Med.Chem. (2020)

Release Date

2020-11-11

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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