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SMTL ID : 7a9u.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 3-(3-(but-3-yn-1-yl)-3H-diazirin-3-yl)-N-(3-methyl-[1,2,4]triazolo[4,3-a]pyridin-8-yl)propanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

1 x R5W: 3-(3-(but-3-yn-1-yl)-3H-diazirin-3-yl)-N-(3-methyl-[1,2,4]triazolo[4,3-a]pyridin-8-yl)propanamide(Non-covalent)

R5W.1:

9 residues within 4Å:

Chain A: P.41, F.42, V.46, L.51, L.53, N.99, K.100, D.103, I.105

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:F.42, A:V.46, A:L.51, A:L.53
Hydrogen bonds: A:N.99, A:N.99, A:K.100, A:K.100, A:D.103
Water bridges: A:N.99, A:K.100

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	1 residues within 4Å: Chain A: W.40 No protein-ligand interaction detected (PLIP)
EDO.3:	2 residues within 4Å: Chain A: Q.82, I.85 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.21, A:Q.82, A:Q.82
EDO.4:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Grant, E.K. et al., A Photoaffinity-Based Fragment-Screening Platform for Efficient Identification of Protein Ligands. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-10-21

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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