SMTL ID : 7ajn.1

Crystal Structure of the first bromodomain of BRD4 in complex with a BzD ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x RGW: ~{N}-(1-adamantylmethyl)-2-[(7~{R},9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,10,12-tetraen-9-yl]ethanamide(Non-covalent)

RGW.1: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, M.108 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:N.99, A:N.99 Water bridges: A:Y.98

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picaud, S. et al., Crystal Structure of the first bromodomain of BRD4 in complex with a BzD ligand. To Be Published

Release Date

2020-12-02

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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