SMTL ID : 7b1t.1

Crystal structure of BRD4(1) in complex with the inhibitor MPM6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x SOK: 3-(5-azanyl-2-chloranyl-phenyl)-1-methyl-4,7-dihydro-2~{H}-cyclohepta[c]pyrrol-8-one(Non-covalent)

SOK.1: 13 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, L.51, L.53, Y.98, N.99, I.105 Ligands: DMS.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:L.51, A:L.51, A:Y.98, A:I.105 Hydrogen bonds: A:P.41, A:Q.44, A:P.45, A:D.47, A:N.99

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: W.40, D.104, I.105, M.108 Ligands: SOK.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105 DMS.3: 3 residues within 4Å: Chain A: N.89, T.93, E.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.93 Water bridges: A:E.113 Salt bridges: A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warstat, R. et al., A novel pan-selective bromodomain inhibitor for epigenetic drug design. Eur.J.Med.Chem. (2023)

Release Date

2022-06-08

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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