SMTL ID : 7b2z.1

Notum complex with ARUK3003907

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.120, A:E.122, A:Y.220, A:Y.220 Water bridges: A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.2: 3 residues within 4Å: Chain A: R.228, R.231, R.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.231, A:R.252 Salt bridges: A:R.228 SO4.8: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Salt bridges: A:R.68 SO4.9: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141 SO4.10: 2 residues within 4Å: Chain A: R.339, H.342 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.339, A:H.342

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97, A.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:N.97, A:A.98 pi-Cation interactions: A:W.96 DMS.5: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.248, A:V.255 DMS.6: 2 residues within 4Å: Chain A: Y.197, R.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197, A:R.198, A:R.198 DMS.7: 4 residues within 4Å: Chain A: P.351, P.356, V.357, H.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.357, A:H.358

1 x SQW: propan-2-yl 4-indol-1-yl-4-oxidanylidene-butanoate(Covalent)

SQW.4: 9 residues within 4Å: Chain A: G.49, G.50, W.51, Y.52, S.155, A.156, T.159, F.191, A.265 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.51, A:T.159, A:F.191, A:F.191, A:F.191, A:A.265 Hydrogen bonds: A:G.50, A:W.51, A:A.156 pi-Stacking: A:Y.52, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Insights into Notum Covalent Inhibition. J.Med.Chem. (2021)

Release Date

2021-08-04

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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