SMTL ID : 7b7x.1

Notum-Fragment063

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56 Salt bridges: A:R.56 SO4.4: 5 residues within 4Å: Chain A: Y.94, W.95, W.96, N.97, A.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.96, A:N.97

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: L.175, G.176, Y.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.176 EDO.6: 3 residues within 4Å: Chain A: R.13, E.36, R.141 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.13, A:E.36, A:E.36, A:E.36, A:R.141 EDO.7: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.252, A:V.255, A:V.255 EDO.8: 8 residues within 4Å: Chain A: L.192, D.193, N.194, A.209, P.210, T.211, V.269, D.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:D.270 EDO.9: 1 residues within 4Å: Chain A: E.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281, A:E.281

1 x WKA: N-(2,1,3-benzoxadiazol-4-yl)acetamide(Non-covalent)

WKA.10: 9 residues within 4Å: Chain A: W.51, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.51, A:A.156, A:F.191, A:I.214 pi-Stacking: A:F.191, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Fragment Screen. To Be Published

Release Date

2021-07-21

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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