SMTL ID : 7b7y.1

Notum-Fragment064

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 2 residues within 4Å: Chain A: R.295, V.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:R.295, A:V.360 Salt bridges: A:R.295 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: Y.197, R.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.198, A:R.198 Water bridges: A:Y.197, A:Y.197 EDO.7: 2 residues within 4Å: Chain A: R.13, E.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13, A:R.13, A:E.36 EDO.8: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.248, A:R.252, A:V.255 EDO.9: 4 residues within 4Å: Chain A: G.39, S.40, R.41, K.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.41 EDO.10: 6 residues within 4Å: Chain A: R.79, T.80, G.81, T.82, L.85, F.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:T.82, A:T.82 EDO.11: 5 residues within 4Å: Chain A: Y.33, W.75, P.76, R.79, P.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79 Water bridges: A:R.68

2 x JFP: N-(4-methyl-1,3-thiazol-2-yl)propanamide(Non-covalent)

JFP.12: 7 residues within 4Å: Chain A: W.51, S.155, A.156, T.159, F.191, F.242, A.265 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.156 pi-Stacking: A:F.191 JFP.13: 3 residues within 4Å: Chain A: R.339, H.342, L.352 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.339, A:L.352 Hydrogen bonds: A:R.339, A:R.339 pi-Cation interactions: A:R.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Fragment Screen. To Be Published

Release Date

2021-07-21

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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