SMTL ID : 7b8a.1

Notum-Fragment 110

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:L.69, A:D.74 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.4: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197 Water bridges: A:Q.280 Salt bridges: A:R.198

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.19, A:N.19, A:R.136 Water bridges: A:E.133

1 x AWP: 1-cyclohexyl-3-(2-pyridin-4-ylethyl)urea(Non-covalent)

AWP.5: 8 residues within 4Å: Chain A: W.51, Y.52, F.191, P.210, F.242, F.243, A.265, V.269 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:F.191, A:P.210, A:F.242, A:F.243 Hydrogen bonds: A:Y.52 pi-Stacking: A:W.51, A:W.51

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: G.50, W.51, S.155, A.156, H.312, E.313 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:A.156 EDO.7: 2 residues within 4Å: Chain A: L.175, Y.177 No protein-ligand interaction detected (PLIP) EDO.8: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.248, A:R.252, A:V.255 EDO.9: 3 residues within 4Å: Chain A: S.40, R.41, R.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41, A:R.42, A:N.97 EDO.10: 7 residues within 4Å: Chain A: L.192, D.193, N.194, Q.196, A.209, P.210, T.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.194, A:T.211, A:T.211 EDO.11: 5 residues within 4Å: Chain A: Y.33, W.75, P.76, R.79, P.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.79 EDO.12: 7 residues within 4Å: Chain A: R.79, T.80, G.81, T.82, L.85, F.102, I.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:T.82, A:T.82 Water bridges: A:T.80 EDO.13: 5 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:W.95, A:N.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Fragment Screen. To Be Published

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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